STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vta1Vesicle (multivesicular body) trafficking 1. (301 aa)    
Predicted Functional Partners:
LOC103456856
Charged multivesicular body protein 5b.
   
 0.978
chmp5
Charged multivesicular body protein 5a.
   
 0.978
ist1
IST1 factor associated with ESCRT-III.
   
 
 0.962
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.958
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.958
LOC103463808
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.958
bcas2
BCAS2 pre-mRNA processing factor.
   
   0.938
chmp2a
Charged multivesicular body protein 2A.
    
 0.926
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.896
chmp1b
Chromatin modifying protein 1B.
    
 
 0.896
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.