STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcc1lRCC1 like. (448 aa)    
Predicted Functional Partners:
pde6d
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
 
 0.733
LOC103469622
Whirlin b.
    
 
 0.686
whrn
Whirlin a.
    
 
 0.686
LOC103475870
Nucleophosmin 1a.
      
 0.681
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
 0.671
LOC103461037
RAN binding protein 2.
   
 0.582
smim14
Small integral membrane protein 14.
      
 0.561
trub2
TruB pseudouridine (psi) synthase family member 2.
    
 
 0.550
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
      
 0.549
cnppd1
Cyclin Pas1/PHO80 domain containing 1.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.