rbm46 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rbm46

RNA binding motif protein 46. (572 aa)

Predicted Functional Partners:

fau

0.721

zfyve28

0.631

LOC103473466

0.583

hnrnpk

0.583

dazl

0.569

exd3

0.549

armc9

0.548

eprs1

0.538

hspbap1

0.534

ENSPREP00000027744

0.518

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000027744	LOC103473466	ENSPREP00000027744	ENSPREP00000004020	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Heterogeneous nuclear ribonucleoprotein K, like.	0.724
ENSPREP00000027744	hnrnpk	ENSPREP00000027744	ENSPREP00000028098	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Heterogeneous nuclear ribonucleoprotein K.	0.724
ENSPREP00000027744	rbm46	ENSPREP00000027744	ENSPREP00000021390	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RNA binding motif protein 46.	0.518
LOC103473466	ENSPREP00000027744	ENSPREP00000004020	ENSPREP00000027744	Heterogeneous nuclear ribonucleoprotein K, like.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.724
LOC103473466	hnrnpk	ENSPREP00000004020	ENSPREP00000028098	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein K.	0.901
LOC103473466	rbm46	ENSPREP00000004020	ENSPREP00000021390	Heterogeneous nuclear ribonucleoprotein K, like.	RNA binding motif protein 46.	0.583
armc9	rbm46	ENSPREP00000010754	ENSPREP00000021390	Armadillo repeat containing 9.	RNA binding motif protein 46.	0.548
dazl	fau	ENSPREP00000001636	ENSPREP00000022382	Deleted in azoospermia-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.627
dazl	rbm46	ENSPREP00000001636	ENSPREP00000021390	Deleted in azoospermia-like.	RNA binding motif protein 46.	0.569
eprs1	fau	ENSPREP00000006338	ENSPREP00000022382	Glutamyl-prolyl-tRNA synthetase.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
eprs1	rbm46	ENSPREP00000006338	ENSPREP00000021390	Glutamyl-prolyl-tRNA synthetase.	RNA binding motif protein 46.	0.538
exd3	rbm46	ENSPREP00000011976	ENSPREP00000021390	Exonuclease 3'-5' domain containing 3.	RNA binding motif protein 46.	0.549
exd3	zfyve28	ENSPREP00000011976	ENSPREP00000022079	Exonuclease 3'-5' domain containing 3.	Zinc finger, FYVE domain containing 28.	0.549
fau	dazl	ENSPREP00000022382	ENSPREP00000001636	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Deleted in azoospermia-like.	0.627
fau	eprs1	ENSPREP00000022382	ENSPREP00000006338	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Glutamyl-prolyl-tRNA synthetase.	0.999
fau	rbm46	ENSPREP00000022382	ENSPREP00000021390	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	RNA binding motif protein 46.	0.721
hnrnpk	ENSPREP00000027744	ENSPREP00000028098	ENSPREP00000027744	Heterogeneous nuclear ribonucleoprotein K.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.724
hnrnpk	LOC103473466	ENSPREP00000028098	ENSPREP00000004020	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein K, like.	0.901
hnrnpk	rbm46	ENSPREP00000028098	ENSPREP00000021390	Heterogeneous nuclear ribonucleoprotein K.	RNA binding motif protein 46.	0.583
hspbap1	rbm46	ENSPREP00000004759	ENSPREP00000021390	Hspb associated protein 1.	RNA binding motif protein 46.	0.534