LOC103458936 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103458936

Ankyrin repeat and SOCS box containing 2b. (562 aa)

Predicted Functional Partners:

asb6

0.589

eloc

0.541

nfkbia

0.520

ift81

0.493

ankra2

0.493

ENSPREP00000014737

0.480

chac2

0.477

cul5

0.473

CUL5

0.473

gpr75

0.469

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL5	LOC103458936	ENSPREP00000025561	ENSPREP00000021570	Cullin 5; Belongs to the cullin family.	Ankyrin repeat and SOCS box containing 2b.	0.473
CUL5	asb6	ENSPREP00000025561	ENSPREP00000017470	Cullin 5; Belongs to the cullin family.	Ankyrin repeat and SOCS box containing 6.	0.766
CUL5	eloc	ENSPREP00000025561	ENSPREP00000020001	Cullin 5; Belongs to the cullin family.	Elongin C paralog a; Belongs to the SKP1 family.	0.976
ENSPREP00000014737	LOC103458936	ENSPREP00000014737	ENSPREP00000021570	ANK_REP_REGION domain-containing protein.	Ankyrin repeat and SOCS box containing 2b.	0.480
ENSPREP00000014737	nfkbia	ENSPREP00000014737	ENSPREP00000012072	ANK_REP_REGION domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.403
LOC103458936	CUL5	ENSPREP00000021570	ENSPREP00000025561	Ankyrin repeat and SOCS box containing 2b.	Cullin 5; Belongs to the cullin family.	0.473
LOC103458936	ENSPREP00000014737	ENSPREP00000021570	ENSPREP00000014737	Ankyrin repeat and SOCS box containing 2b.	ANK_REP_REGION domain-containing protein.	0.480
LOC103458936	ankra2	ENSPREP00000021570	ENSPREP00000030880	Ankyrin repeat and SOCS box containing 2b.	Ankyrin repeat, family A (RFXANK-like), 2.	0.493
LOC103458936	asb6	ENSPREP00000021570	ENSPREP00000017470	Ankyrin repeat and SOCS box containing 2b.	Ankyrin repeat and SOCS box containing 6.	0.589
LOC103458936	chac2	ENSPREP00000021570	ENSPREP00000008158	Ankyrin repeat and SOCS box containing 2b.	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.477
LOC103458936	cul5	ENSPREP00000021570	ENSPREP00000024104	Ankyrin repeat and SOCS box containing 2b.	Cullin 5; Belongs to the cullin family.	0.473
LOC103458936	eloc	ENSPREP00000021570	ENSPREP00000020001	Ankyrin repeat and SOCS box containing 2b.	Elongin C paralog a; Belongs to the SKP1 family.	0.541
LOC103458936	gpr75	ENSPREP00000021570	ENSPREP00000033910	Ankyrin repeat and SOCS box containing 2b.	G protein-coupled receptor 75.	0.469
LOC103458936	ift81	ENSPREP00000021570	ENSPREP00000024120	Ankyrin repeat and SOCS box containing 2b.	Intraflagellar transport 81 homolog.	0.493
LOC103458936	nfkbia	ENSPREP00000021570	ENSPREP00000012072	Ankyrin repeat and SOCS box containing 2b.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.520
ankra2	LOC103458936	ENSPREP00000030880	ENSPREP00000021570	Ankyrin repeat, family A (RFXANK-like), 2.	Ankyrin repeat and SOCS box containing 2b.	0.493
ankra2	ift81	ENSPREP00000030880	ENSPREP00000024120	Ankyrin repeat, family A (RFXANK-like), 2.	Intraflagellar transport 81 homolog.	0.400
asb6	CUL5	ENSPREP00000017470	ENSPREP00000025561	Ankyrin repeat and SOCS box containing 6.	Cullin 5; Belongs to the cullin family.	0.766
asb6	LOC103458936	ENSPREP00000017470	ENSPREP00000021570	Ankyrin repeat and SOCS box containing 6.	Ankyrin repeat and SOCS box containing 2b.	0.589
asb6	cul5	ENSPREP00000017470	ENSPREP00000024104	Ankyrin repeat and SOCS box containing 6.	Cullin 5; Belongs to the cullin family.	0.766