STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461092Serine/threonine/tyrosine kinase 1b. (466 aa)    
Predicted Functional Partners:
LOC103475676
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.727
LOC103469402
Caveolae associated protein 1a.
   
  
 0.648
ENSPREP00000024044
Uncharacterized protein.
      
 0.646
ENSPREP00000017978
Uncharacterized protein.
   
  
 0.526
tpm4
Tropomyosin 4a; Belongs to the tropomyosin family.
   
  
 0.526
il34
Interleukin 34.
   
 0.509
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
     
 0.498
Kitlg
Kit ligand a.
    
 0.490
LOC103467541
Colony stimulating factor 1b (macrophage).
   
  0.438
nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
      
 0.422
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.