ENSPREP00000021720 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000021720

Uncharacterized protein. (229 aa)

Predicted Functional Partners:

ENSPREP00000018081

0.919

ENSPREP00000010111

0.900

ENSPREP00000010180

0.900

DST

0.899

ENSPREP00000033175

0.894

LOC103463397

0.822

ENSPREP00000010069

0.764

dsp

0.739

ENSPREP00000021455

0.677

ENSPREP00000021774

0.635

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DST	ENSPREP00000021720	ENSPREP00000033017	ENSPREP00000021720	Dystonin.	Uncharacterized protein.	0.899
ENSPREP00000010069	ENSPREP00000010111	ENSPREP00000010069	ENSPREP00000010111	Uncharacterized protein.	Uncharacterized protein.	0.915
ENSPREP00000010069	ENSPREP00000010180	ENSPREP00000010069	ENSPREP00000010180	Uncharacterized protein.	EF-hand domain-containing protein.	0.795
ENSPREP00000010069	ENSPREP00000021455	ENSPREP00000010069	ENSPREP00000021455	Uncharacterized protein.	Microtubule actin crosslinking factor 1b.	0.502
ENSPREP00000010069	ENSPREP00000021720	ENSPREP00000010069	ENSPREP00000021720	Uncharacterized protein.	Uncharacterized protein.	0.764
ENSPREP00000010069	ENSPREP00000033175	ENSPREP00000010069	ENSPREP00000033175	Uncharacterized protein.	Uncharacterized protein.	0.690
ENSPREP00000010111	ENSPREP00000010069	ENSPREP00000010111	ENSPREP00000010069	Uncharacterized protein.	Uncharacterized protein.	0.915
ENSPREP00000010111	ENSPREP00000010180	ENSPREP00000010111	ENSPREP00000010180	Uncharacterized protein.	EF-hand domain-containing protein.	0.940
ENSPREP00000010111	ENSPREP00000021455	ENSPREP00000010111	ENSPREP00000021455	Uncharacterized protein.	Microtubule actin crosslinking factor 1b.	0.929
ENSPREP00000010111	ENSPREP00000021720	ENSPREP00000010111	ENSPREP00000021720	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSPREP00000010111	ENSPREP00000021774	ENSPREP00000010111	ENSPREP00000021774	Uncharacterized protein.	SH3 domain-containing protein.	0.781
ENSPREP00000010180	ENSPREP00000010069	ENSPREP00000010180	ENSPREP00000010069	EF-hand domain-containing protein.	Uncharacterized protein.	0.795
ENSPREP00000010180	ENSPREP00000010111	ENSPREP00000010180	ENSPREP00000010111	EF-hand domain-containing protein.	Uncharacterized protein.	0.940
ENSPREP00000010180	ENSPREP00000021720	ENSPREP00000010180	ENSPREP00000021720	EF-hand domain-containing protein.	Uncharacterized protein.	0.900
ENSPREP00000010180	ENSPREP00000021774	ENSPREP00000010180	ENSPREP00000021774	EF-hand domain-containing protein.	SH3 domain-containing protein.	0.570
ENSPREP00000018081	ENSPREP00000021720	ENSPREP00000018081	ENSPREP00000021720	PH_9 domain-containing protein.	Uncharacterized protein.	0.919
ENSPREP00000021455	ENSPREP00000010069	ENSPREP00000021455	ENSPREP00000010069	Microtubule actin crosslinking factor 1b.	Uncharacterized protein.	0.502
ENSPREP00000021455	ENSPREP00000010111	ENSPREP00000021455	ENSPREP00000010111	Microtubule actin crosslinking factor 1b.	Uncharacterized protein.	0.929
ENSPREP00000021455	ENSPREP00000021720	ENSPREP00000021455	ENSPREP00000021720	Microtubule actin crosslinking factor 1b.	Uncharacterized protein.	0.677
ENSPREP00000021455	ENSPREP00000021774	ENSPREP00000021455	ENSPREP00000021774	Microtubule actin crosslinking factor 1b.	SH3 domain-containing protein.	0.878