STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476346Remodeling and spacing factor 1b, tandem duplicate 1. (1987 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.889
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.667
LOC103468399
Bromodomain PHD finger transcription factor.
   
 
 0.667
cenpi
Centromere protein I.
  
 
 0.588
arid4b
Translocase of outer mitochondrial membrane 20.
   
    0.561
atrx
ATRX chromatin remodeler.
   
  0.555
cenpn
Centromere protein N.
    
 0.468
wdr18
WD repeat domain 18.
   
 0.460
ENSPREP00000020767
Uncharacterized protein.
   
 
 0.459
LOC103473783
Nipped-B protein.
   
 
 0.459
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.