STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466451Protogenin homolog b (Gallus gallus). (861 aa)    
Predicted Functional Partners:
LOC103474046
Fibronectin type-III domain-containing protein.
     
 0.592
rsl24d1
Ribosomal L24 domain containing 1.
 
    
 0.570
gnb5
Guanine nucleotide binding protein (G protein), beta 5a.
    
 0.550
capsl
Calcyphosine-like b.
      
 0.549
LOC103466453
cAMP-regulated phosphoprotein 19a; Protein phosphatase inhibitor that specifically inhibits protein phosphatase 2A (PP2A) during mitosis. Belongs to the endosulfine family.
      
 0.549
LOC103478149
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.549
hmg20b
High mobility group 20B.
    
 
 0.534
fam214a
Family with sequence similarity 214 member A.
      
 0.526
LOC103474050
LMBR1 domain containing 2b.
      
 0.526
btbd2
BTB (POZ) domain containing 2b.
      
 0.526
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.