STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrp1bLow density lipoprotein receptor-related protein 1Bb. (4518 aa)    
Predicted Functional Partners:
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
   
 
 0.654
epha3
Eph receptor A3.
    
 0.614
zmym2
Zinc finger, MYM-type 2.
    
 0.607
agrn
Agrin.
    
 0.597
ralgds
Ral guanine nucleotide dissociation stimulator.
      
 0.596
ctnnd2
Catenin (cadherin-associated protein), delta 2b.
      
 0.593
RELN
Reelin.
    
 0.588
LOC103476799
Dickkopf WNT signaling pathway inhibitor 1a.
    
 0.583
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.567
ENSPREP00000015831
Uncharacterized protein.
    
 0.555
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.