STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FUBP3Far upstream element binding protein 3. (572 aa)    
Predicted Functional Partners:
PUF60
Poly-U binding splicing factor b.
   
 
 0.683
parn
Poly(A)-specific ribonuclease (deadenylation nuclease).
   
 0.551
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.504
exosc2
Exosome component 2.
   
  0.462
ENSPREP00000000945
Uncharacterized protein.
   
 0.461
dcp2
Decapping mRNA 2.
     
 0.461
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.445
LOC103458862
QKI, KH domain containing, RNA binding a.
   
 
 0.445
exosc3
Exosome component 3.
   
 
 0.444
exosc5
Exosome component 5.
   
 
 0.441
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.