STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461139RNA binding motif protein 39b. (500 aa)    
Predicted Functional Partners:
LOC103477214
Uncharacterized protein.
   
  0.899
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.887
LOC103457395
RNA binding motif protein 25b.
   
 0.822
LOC103458235
RNA binding motif protein 25a.
   
 0.822
luc7l3
Uncharacterized protein.
   
 0.811
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.784
LOC103469439
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.784
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.760
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
  0.753
sf1
Splicing factor 1.
   
 0.730
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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