STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx56DEAD (Asp-Glu-Ala-Asp) box helicase 56. (565 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.993
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.985
rbm34
RNA binding motif protein 34.
   
 0.963
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.962
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
  
 
0.958
ebna1bp2
EBNA1 binding protein 2.
   
 0.957
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.955
brix1
Brix domain containing 2.
   
 
 0.954
rbm28
RNA binding motif protein 28.
   
 0.952
Wdr74
WD repeat domain 74.
   
 
 0.949
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.