STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcas3BCAS3 microtubule associated cell migration factor. (666 aa)    
Predicted Functional Partners:
Bcas3
Uncharacterized protein.
 
      0.899
clg6h16orf70
Si:dkey-102f14.5.
   
 
 0.876
serpinc1
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
      
 0.549
ENSPREP00000024840
TIR domain-containing protein.
      
 0.529
LOC103468270
WD repeat domain, phosphoinositide interacting 1.
   
 
 0.522
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 
 0.522
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 
 0.522
axdnd1
Axonemal dynein light chain domain containing 1.
      
 0.472
znf407
Zinc finger protein 407.
      
 0.454
dtnbp1
Dystrobrevin binding protein 1b.
      
 0.441
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.