STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466048Nuclear factor of activated T cells 5a. (1405 aa)    
Predicted Functional Partners:
LOC103462477
Microtubule associated monooxygenase, calponin and LIM domain containing 2a.
      
 0.549
LOC103462479
Dickkopf WNT signaling pathway inhibitor 3a.
      
 0.549
usp47
Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family.
      
 0.549
CLEC3A
C-type lectin domain family 3 member A.
   
  
 0.549
ABI1
Abl-interactor 1a.
      
 0.475
LOC103471255
Glutamine-fructose-6-phosphate transaminase 2.
      
 0.473
TCF4
Transcription factor 4.
      
 0.473
LOC103461595
Uncharacterized protein.
      
 0.403
LOC103460853
Uncharacterized protein.
      
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.