LOC103479892 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103479892

Tyrosine-protein kinase. (473 aa)

Predicted Functional Partners:

LOC103458742

0.941

ENSPREP00000024995

0.932

LOC103463938

0.910

CTNND1

0.910

YES1

0.901

matk

0.662

LOC103466413

0.655

CSK

0.654

LOC103477977

0.616

grb2

0.613

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSK	ENSPREP00000024995	ENSPREP00000012179	ENSPREP00000024995	Tyrosine-protein kinase.	Protein kinase domain-containing protein.	0.401
CSK	LOC103458742	ENSPREP00000012179	ENSPREP00000009827	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.607
CSK	LOC103477977	ENSPREP00000012179	ENSPREP00000018685	Tyrosine-protein kinase.	Uncharacterized protein.	0.605
CSK	LOC103479892	ENSPREP00000012179	ENSPREP00000022831	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.654
CSK	YES1	ENSPREP00000012179	ENSPREP00000011214	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.648
CSK	grb2	ENSPREP00000012179	ENSPREP00000022510	Tyrosine-protein kinase.	Growth factor receptor-bound protein 2b.	0.620
CTNND1	ENSPREP00000024995	ENSPREP00000026535	ENSPREP00000024995	Catenin delta 1.	Protein kinase domain-containing protein.	0.907
CTNND1	LOC103458742	ENSPREP00000026535	ENSPREP00000009827	Catenin delta 1.	Tyrosine-protein kinase.	0.910
CTNND1	LOC103463938	ENSPREP00000026535	ENSPREP00000002099	Catenin delta 1.	Catenin (cadherin-associated protein), delta 1.	0.902
CTNND1	LOC103479892	ENSPREP00000026535	ENSPREP00000022831	Catenin delta 1.	Tyrosine-protein kinase.	0.910
CTNND1	YES1	ENSPREP00000026535	ENSPREP00000011214	Catenin delta 1.	Tyrosine-protein kinase.	0.910
ENSPREP00000024995	CSK	ENSPREP00000024995	ENSPREP00000012179	Protein kinase domain-containing protein.	Tyrosine-protein kinase.	0.401
ENSPREP00000024995	CTNND1	ENSPREP00000024995	ENSPREP00000026535	Protein kinase domain-containing protein.	Catenin delta 1.	0.907
ENSPREP00000024995	LOC103463938	ENSPREP00000024995	ENSPREP00000002099	Protein kinase domain-containing protein.	Catenin (cadherin-associated protein), delta 1.	0.907
ENSPREP00000024995	LOC103466413	ENSPREP00000024995	ENSPREP00000023780	Protein kinase domain-containing protein.	Tyrosine-protein kinase.	0.401
ENSPREP00000024995	LOC103479892	ENSPREP00000024995	ENSPREP00000022831	Protein kinase domain-containing protein.	Tyrosine-protein kinase.	0.932
ENSPREP00000024995	YES1	ENSPREP00000024995	ENSPREP00000011214	Protein kinase domain-containing protein.	Tyrosine-protein kinase.	0.932
ENSPREP00000024995	matk	ENSPREP00000024995	ENSPREP00000026102	Protein kinase domain-containing protein.	Tyrosine-protein kinase.	0.401
LOC103458742	CSK	ENSPREP00000009827	ENSPREP00000012179	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.607
LOC103458742	CTNND1	ENSPREP00000009827	ENSPREP00000026535	Tyrosine-protein kinase.	Catenin delta 1.	0.910