LOC103468401 protein (Poecilia reticulata) - STRING interaction network

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second shell of interactors

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Edges:

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

LOC103468401

DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (636 aa)

Predicted Functional Partners:

DDX5

0.901

pes1

0.863

sf3b1

0.834

mtrex

0.813

ebna1bp2

0.812

dhx9

0.798

nop58

0.780

dkc1

0.778

gnl3

0.765

gnl3l

0.765

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	LOC103468401	ENSPREP00000027962	ENSPREP00000022845	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.901
DDX5	dhx9	ENSPREP00000027962	ENSPREP00000028546	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.798
DDX5	dkc1	ENSPREP00000027962	ENSPREP00000005982	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Dyskeratosis congenita 1, dyskerin.	0.778
DDX5	ebna1bp2	ENSPREP00000027962	ENSPREP00000031115	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	EBNA1 binding protein 2.	0.812
DDX5	gnl3	ENSPREP00000027962	ENSPREP00000004179	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.765
DDX5	gnl3l	ENSPREP00000027962	ENSPREP00000032461	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.765
DDX5	mtrex	ENSPREP00000027962	ENSPREP00000004435	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Mtr4 exosome RNA helicase.	0.813
DDX5	nop58	ENSPREP00000027962	ENSPREP00000020896	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	NOP58 ribonucleoprotein homolog (yeast).	0.780
DDX5	pes1	ENSPREP00000027962	ENSPREP00000033339	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.863
DDX5	sf3b1	ENSPREP00000027962	ENSPREP00000029090	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Splicing factor 3b, subunit 1.	0.834
LOC103468401	DDX5	ENSPREP00000022845	ENSPREP00000027962	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.901
LOC103468401	dhx9	ENSPREP00000022845	ENSPREP00000028546	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.798
LOC103468401	dkc1	ENSPREP00000022845	ENSPREP00000005982	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Dyskeratosis congenita 1, dyskerin.	0.778
LOC103468401	ebna1bp2	ENSPREP00000022845	ENSPREP00000031115	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	EBNA1 binding protein 2.	0.812
LOC103468401	gnl3	ENSPREP00000022845	ENSPREP00000004179	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.765
LOC103468401	gnl3l	ENSPREP00000022845	ENSPREP00000032461	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.765
LOC103468401	mtrex	ENSPREP00000022845	ENSPREP00000004435	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Mtr4 exosome RNA helicase.	0.813
LOC103468401	nop58	ENSPREP00000022845	ENSPREP00000020896	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	NOP58 ribonucleoprotein homolog (yeast).	0.780
LOC103468401	pes1	ENSPREP00000022845	ENSPREP00000033339	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.863
LOC103468401	sf3b1	ENSPREP00000022845	ENSPREP00000029090	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Splicing factor 3b, subunit 1.	0.834

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Network Stats

number of nodes:

11

number of edges:

32

average node degree:

5.82

avg. local clustering coefficient:

0.714

expected number of edges:

25

PPI enrichment p-value:

0.0932

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008380

RNA splicing

10 of 335

1.79

4.36

4.73e-14

GO:0006397

mRNA processing

10 of 420

1.69

3.84

2.19e-13

GO:0000398

mRNA splicing, via spliceosome

7 of 217

1.83

3.34

3.40e-09

GO:0051028

mRNA transport

4 of 90

1.97

2.11

4.38e-05

GO:0010467

Gene expression

11 of 1665

1.14

1.61

5.16e-10

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003723

RNA binding

11 of 1169

1.29

2.14

1.77e-11

GO:0003729

mRNA binding

4 of 282

1.47

1.06

0.0040

GO:0000339

RNA cap binding

2 of 16

2.41

1.01

0.0143

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005846

Nuclear cap binding complex

2 of 2

3.32

1.55

0.0016

GO:0016607

Nuclear speck

4 of 269

1.49

1.18

0.0019

GO:0002102

Podosome

2 of 18

2.36

1.16

0.0072

GO:0016604

Nuclear body

5 of 483

1.33

1.09

0.0016

GO:0005681

Spliceosomal complex

3 of 167

1.57

0.97

0.0089

(more ...)

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37941135

(2023) Alternative splicing induced by bacterial pore-forming toxins sharpens CIRBP-mediated cell response to Listeria infection.

2 of 15

2.44

0.89

0.0234

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2649

RNA Polymerase II Transcription Termination, and mRNA Splicing - Major Pathway

11 of 130

2.25

8.36

1.64e-21

CL:2657

RNA recognition motif domain

8 of 71

2.37

6.63

5.76e-15

CL:2737

mRNA 3-end processing

4 of 22

2.58

3.37

4.30e-07

CL:2739

Mixed, incl. SRSF7, RNA recognition motif, and SRSF1, RNA recognition motif 1

3 of 13

2.68

2.46

2.89e-05

CL:2665

Mixed, incl. ROK, N-terminal, and TAF15/EWS/TLS family

3 of 13

2.68

2.46

2.89e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

pret03040

Spliceosome

9 of 120

2.19

6.81

3.94e-17

pret03015

mRNA surveillance pathway

3 of 76

1.91

1.63

0.00050

pret05168

Herpes simplex virus 1 infection

4 of 268

1.49

1.37

0.00050

pret03013

RNA transport

3 of 136

1.66

1.31

0.0015

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72163

mRNA Splicing - Major Pathway

11 of 251

1.96

6.14

6.02e-19

MAP-72172

mRNA Splicing

11 of 272

1.92

5.93

7.14e-19

MAP-73856

RNA Polymerase II Transcription Termination

7 of 78

2.27

5.56

8.26e-13

MAP-72203

Processing of Capped Intron-Containing Pre-mRNA

11 of 362

1.8

5.04

1.04e-17

MAP-72187

mRNA 3-end processing

6 of 67

2.27

4.73

1.08e-10

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0016607

Nuclear speck

4 of 79

2.02

2.03

8.00e-05

GOCC:0005846

Nuclear cap binding complex

2 of 3

3.14

1.64

0.0011

GOCC:0002102

Podosome

2 of 25

2.22

0.89

0.0225

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0694

RNA-binding

8 of 325

1.71

3.4

9.87e-11

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR000504

RNA recognition motif domain

8 of 233

1.85

3.77

1.54e-10

IPR035979

RNA-binding domain superfamily

8 of 257

1.81

3.65

1.66e-10

IPR012677

Nucleotide-binding alpha-beta plait domain superfamily

8 of 264

1.8

3.62

1.66e-10

IPR012987

ROK, N-terminal

2 of 2

3.32

1.48

0.0022

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00360

RNA recognition motif

8 of 227

1.86

4.08

1.38e-11

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