STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103457903Homeobox domain-containing protein. (307 aa)    
Predicted Functional Partners:
hhex
Homeobox domain-containing protein.
   
  
 0.533
znf366
Zinc finger protein 366.
    
 
 0.533
rorb
RAR-related orphan receptor B.
    
 
 0.472
fgf5
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.458
foxa2
Forkhead box A2.
   
 
 0.432
foxa1
Fork-head domain-containing protein.
   
 
 0.432
chrd
Chordin; Belongs to the chordin family.
    
 
 0.426
LOC103473609
POU domain protein.
   
 
 0.418
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
   
 
 0.407
LOC103466558
Nuclear receptor subfamily 2, group E, member 3.
   
 
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.