STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473813Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (787 aa)    
Predicted Functional Partners:
chp1
Calcineurin-like EF-hand protein 1.
   
 0.782
LOC103460026
Calcineurin-like EF-hand protein 2.
   
 0.675
tmem121
Transmembrane protein 121Ab.
      
 0.597
tesc
Tescalcin a.
   
 0.567
LOC103473749
Tescalcin b.
   
 0.567
ppp3r1
Uncharacterized protein.
   
 0.563
LOC103472014
Uncharacterized protein.
   
 0.563
LOC103466132
CD44 molecule (Indian blood group) b.
     
 0.484
cib1
Calcium and integrin binding 1 (calmyrin).
   
 0.473
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.