STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103460536RAP domain-containing protein. (671 aa)    
Predicted Functional Partners:
ENSPREP00000006896
2-epi-5-epi-valiolone synthase.
    
  0.612
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.472
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.472
sardh
Sarcosine dehydrogenase.
  
 0.472
dmgdh
Dimethylglycine dehydrogenase.
  
 0.472
mipep
Mitochondrial intermediate peptidase.
   
 
 0.449
ENSPREP00000016750
Succinate-CoA ligase, ADP-forming, beta subunit.
  
 
 0.437
rplp0
Ribosomal protein, large, P0.
    
 
 0.418
pitrm1
Pitrilysin metallopeptidase 1.
   
 
 0.417
dpp3
Dipeptidyl peptidase 3; Belongs to the peptidase M49 family.
   
 
 0.415
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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