STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464182Coproporphyrinogen oxidase. (278 aa)    
Predicted Functional Partners:
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.873
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 0.799
ENDOV
Endonuclease V.
  
 0.766
hemk1
HemK methyltransferase family member 1.
   
 
 0.671
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
   
 
 0.671
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
   
  
 0.550
hmbs
Hydroxymethylbilane synthase a.
  
  
 0.545
alad
Uncharacterized protein; Belongs to the ALAD family.
  
  
 0.526
sqle
Squalene epoxidase a.
   
  
 0.523
uros
Uroporphyrinogen III synthase.
     
 0.492
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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