STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube4bUbiquitination factor E4B, UFD2 homolog (S. cerevisiae). (1184 aa)    
Predicted Functional Partners:
yod1
YOD1 deubiquitinase.
    
 
 0.938
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.936
trip12
Thyroid hormone receptor interactor 12.
   
 0.927
ubqln4
Ubiquilin 4.
   
 0.906
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.888
Rad23a
Ubiquitin-like domain-containing protein.
   
 0.860
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.860
LOC103482061
Zgc:136908; Belongs to the AAA ATPase family.
  
 
 0.857
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.857
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.840
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.