LOC103482356 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103482356

Contactin associated protein-like 5a. (1293 aa)

Predicted Functional Partners:

cntn2

0.430

CNTN1

0.402

cntn1

0.402

cntn5

0.402

LOC103467234

0.402

LOC103467239

0.402

LOC103465393

0.402

LOC103465395

0.402

LOC103460464

0.402

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	LOC103482356	ENSPREP00000013907	ENSPREP00000023300	Contactin 1.	Contactin associated protein-like 5a.	0.402
CNTN1	cntn1	ENSPREP00000013907	ENSPREP00000016779	Contactin 1.	Contactin 1b.	0.902
LOC103460464	LOC103482356	ENSPREP00000026438	ENSPREP00000023300	Contactin 3b.	Contactin associated protein-like 5a.	0.402
LOC103465393	LOC103482356	ENSPREP00000025252	ENSPREP00000023300	Uncharacterized protein.	Contactin associated protein-like 5a.	0.402
LOC103465395	LOC103482356	ENSPREP00000025312	ENSPREP00000023300	Contactin 4.	Contactin associated protein-like 5a.	0.402
LOC103467234	LOC103482356	ENSPREP00000024219	ENSPREP00000023300	Contactin 3a, tandem duplicate 2.	Contactin associated protein-like 5a.	0.402
LOC103467239	LOC103482356	ENSPREP00000024445	ENSPREP00000023300	Contactin 3a, tandem duplicate 1.	Contactin associated protein-like 5a.	0.402
LOC103482356	CNTN1	ENSPREP00000023300	ENSPREP00000013907	Contactin associated protein-like 5a.	Contactin 1.	0.402
LOC103482356	LOC103460464	ENSPREP00000023300	ENSPREP00000026438	Contactin associated protein-like 5a.	Contactin 3b.	0.402
LOC103482356	LOC103465393	ENSPREP00000023300	ENSPREP00000025252	Contactin associated protein-like 5a.	Uncharacterized protein.	0.402
LOC103482356	LOC103465395	ENSPREP00000023300	ENSPREP00000025312	Contactin associated protein-like 5a.	Contactin 4.	0.402
LOC103482356	LOC103467234	ENSPREP00000023300	ENSPREP00000024219	Contactin associated protein-like 5a.	Contactin 3a, tandem duplicate 2.	0.402
LOC103482356	LOC103467239	ENSPREP00000023300	ENSPREP00000024445	Contactin associated protein-like 5a.	Contactin 3a, tandem duplicate 1.	0.402
LOC103482356	cntn1	ENSPREP00000023300	ENSPREP00000016779	Contactin associated protein-like 5a.	Contactin 1b.	0.402
LOC103482356	cntn2	ENSPREP00000023300	ENSPREP00000029196	Contactin associated protein-like 5a.	Contactin 2.	0.430
LOC103482356	cntn5	ENSPREP00000023300	ENSPREP00000023426	Contactin associated protein-like 5a.	Contactin 5.	0.402
cntn1	CNTN1	ENSPREP00000016779	ENSPREP00000013907	Contactin 1b.	Contactin 1.	0.902
cntn1	LOC103482356	ENSPREP00000016779	ENSPREP00000023300	Contactin 1b.	Contactin associated protein-like 5a.	0.402
cntn2	LOC103482356	ENSPREP00000029196	ENSPREP00000023300	Contactin 2.	Contactin associated protein-like 5a.	0.430
cntn5	LOC103482356	ENSPREP00000023426	ENSPREP00000023300	Contactin 5.	Contactin associated protein-like 5a.	0.402