STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip1Tumor necrosis factor, alpha-induced protein 1 (endothelial). (324 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
 0.909
ubxn1
UBX domain protein 1.
   
 
 0.711
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.613
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.519
LOC103474461
Cullin 3; Belongs to the cullin family.
    
 0.519
LOC103469368
Rho family GTPase 2.
    
 0.498
LOC103481273
Rho family GTPase 2.
    
 0.498
RND1
Rho family GTPase 1.
    
 0.458
rnd3
Rho family GTPase 3a.
    
 0.458
LOC103467313
Rho family GTPase 1b.
    
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.