STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471420Si:ch211-168f7.5. (1072 aa)    
Predicted Functional Partners:
tcf20
Transcription factor 20.
  
     0.511
LOC103476207
Si:dkey-175m17.7.
  
     0.506
LOC103480795
Uncharacterized protein.
  
     0.495
LOC103459291
Uncharacterized protein.
  
     0.494
LOC103468964
SET domain-containing protein.
  
     0.461
LOC103469981
Amphiregulin.
  
     0.457
LOC103476706
Coiled-coil serine-rich protein 2a.
  
     0.449
ENSPREP00000032220
Growth arrest-specific 2 like 1.
  
     0.448
LOC103464535
RNA binding motif protein 6.
  
     0.442
LOC103470055
BZIP domain-containing protein.
  
     0.430
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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