STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cep83Centrosomal protein 83. (716 aa)    
Predicted Functional Partners:
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
 0.688
sclt1
Sodium channel and clathrin linker 1.
   
 0.680
CEP164
Centrosomal protein 164.
    
 0.663
cep89
Centrosomal protein 89.
     
 0.653
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.618
LOC103466495
RAB3A interacting protein (rabin3)-like 1.
     
 0.605
rab3ip
RAB3A interacting protein (rabin3).
     
 0.605
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.600
fbf1
Uncharacterized protein.
    
 0.598
uso1
USO1 vesicle transport factor.
   
 0.597
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.