STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcmt1Protein-L-isoaspartate (D-aspartate) O-methyltransferase. (222 aa)    
Predicted Functional Partners:
tmbim6
Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.
      
 0.550
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.487
tmem183a
Transmembrane protein 183A.
      
 0.473
LOC103475137
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
   
  
 0.471
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.469
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
     
 0.468
ak4
Adenylate kinase 4; Belongs to the adenylate kinase family.
   
  
 0.461
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.458
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.451
mrpl15
Mitochondrial ribosomal protein L15.
      
 0.438
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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