STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCB1ATP binding cassette subfamily B member 1. (1152 aa)    
Predicted Functional Partners:
Katnal2
Katanin p60 subunit A-like 2.
  
 0.576
msh5
MutS homolog 5.
      
 0.549
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.526
ENSPREP00000003924
ATP-binding cassette, sub-family E (OABP), member 1.
      
 0.518
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.517
LOC103476623
Uncharacterized protein.
   
  
 0.514
nr1i2
Nuclear receptor subfamily 1, group I, member 2.
   
 0.499
abcb6
ATP-binding cassette, sub-family B (MDR/TAP), member 6a.
    
0.493
abcc5
ATP-binding cassette, sub-family C (CFTR/MRP), member 5.
   
0.485
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
     
 0.485
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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