STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103456526Hepatocyte nuclear factor 4, gamma. (549 aa)    
Predicted Functional Partners:
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 
 0.686
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
   
0.671
Hnf1b
HNF1 homeobox Ba.
   
 0.571
hnf1a
HNF1 homeobox a.
   
 0.571
ncor2
Nuclear receptor corepressor 2.
    
 0.555
ncor1
Nuclear receptor corepressor 1.
    
 0.555
rpl9
Ribosomal protein L9.
    
 0.554
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.500
TADA1
Transcriptional adaptor 1.
    
 0.494
LOC103464091
CREB binding protein a.
    
 
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.