amer2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

amer2

APC membrane recruitment protein 2. (695 aa)

Predicted Functional Partners:

mbd1

0.568

LOC103474013

0.541

LOC103466742

0.495

LOC103459610

0.491

LOC103475709

0.461

KIF18A

0.458

LOC103481734

0.449

LOC103460570

0.412

gas7

0.412

ENSPREP00000006462

0.410

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000006462	amer2	ENSPREP00000006462	ENSPREP00000024241	Calponin-homology (CH) domain-containing protein.	APC membrane recruitment protein 2.	0.410
KIF18A	LOC103459610	ENSPREP00000033468	ENSPREP00000021090	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Si:ch211-214j24.10.	0.443
KIF18A	amer2	ENSPREP00000033468	ENSPREP00000024241	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	APC membrane recruitment protein 2.	0.458
KIF18A	mbd1	ENSPREP00000033468	ENSPREP00000032183	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Methyl-CpG binding domain protein 1b.	0.450
LOC103459610	KIF18A	ENSPREP00000021090	ENSPREP00000033468	Si:ch211-214j24.10.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.443
LOC103459610	LOC103466742	ENSPREP00000021090	ENSPREP00000028462	Si:ch211-214j24.10.	Uncharacterized protein.	0.516
LOC103459610	amer2	ENSPREP00000021090	ENSPREP00000024241	Si:ch211-214j24.10.	APC membrane recruitment protein 2.	0.491
LOC103459610	mbd1	ENSPREP00000021090	ENSPREP00000032183	Si:ch211-214j24.10.	Methyl-CpG binding domain protein 1b.	0.487
LOC103460570	amer2	ENSPREP00000004683	ENSPREP00000024241	Growth arrest-specific 7a.	APC membrane recruitment protein 2.	0.412
LOC103466742	LOC103459610	ENSPREP00000028462	ENSPREP00000021090	Uncharacterized protein.	Si:ch211-214j24.10.	0.516
LOC103466742	LOC103481734	ENSPREP00000028462	ENSPREP00000019605	Uncharacterized protein.	Fibrosin.	0.400
LOC103466742	amer2	ENSPREP00000028462	ENSPREP00000024241	Uncharacterized protein.	APC membrane recruitment protein 2.	0.495
LOC103466742	mbd1	ENSPREP00000028462	ENSPREP00000032183	Uncharacterized protein.	Methyl-CpG binding domain protein 1b.	0.504
LOC103474013	amer2	ENSPREP00000001507	ENSPREP00000024241	Ras association domain family member 6.	APC membrane recruitment protein 2.	0.541
LOC103475709	amer2	ENSPREP00000030777	ENSPREP00000024241	Androgen receptor.	APC membrane recruitment protein 2.	0.461
LOC103481734	LOC103466742	ENSPREP00000019605	ENSPREP00000028462	Fibrosin.	Uncharacterized protein.	0.400
LOC103481734	amer2	ENSPREP00000019605	ENSPREP00000024241	Fibrosin.	APC membrane recruitment protein 2.	0.449
LOC103481734	mbd1	ENSPREP00000019605	ENSPREP00000032183	Fibrosin.	Methyl-CpG binding domain protein 1b.	0.502
amer2	ENSPREP00000006462	ENSPREP00000024241	ENSPREP00000006462	APC membrane recruitment protein 2.	Calponin-homology (CH) domain-containing protein.	0.410
amer2	KIF18A	ENSPREP00000024241	ENSPREP00000033468	APC membrane recruitment protein 2.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.458