STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps45Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family. (576 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.999
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.993
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.945
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.910
mto1
Mitochondrial tRNA translation optimization 1.
 
      0.900
ergic3
ERGIC and golgi 3.
 
      0.900
ENSPREP00000034091
Uncharacterized protein.
 
      0.898
stx10
Syntaxin 10.
    
 
 0.890
stx6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.890
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.869
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.