STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF4Transcription factor 4. (565 aa)    
Predicted Functional Partners:
Tal1
BHLH domain-containing protein.
   
 0.749
LOC103479412
T-cell acute lymphocytic leukemia 1.
   
 0.749
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.742
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.714
LOC103465574
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.685
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.683
ENSPREP00000028461
Achaete-scute family bHLH transcription factor 1b.
   
 0.683
myog
Myogenin.
   
 0.671
ENSPREP00000002748
Myogenic factor.
   
 0.661
LOC103462938
Myogenic factor.
   
 0.661
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.