STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000024411Uncharacterized protein. (119 aa)    
Predicted Functional Partners:
LOC103465907
Inhibitor of DNA binding 4.
    
 
 0.615
LOC103465574
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.615
ENSPREP00000002748
Myogenic factor.
   
 0.581
myog
Myogenin.
   
 0.581
LOC103462938
Myogenic factor.
   
 0.581
myf5
Myogenic factor.
   
 0.581
myf6
Myogenic factor 6.
   
 0.581
LOC103465371
LIM-domain binding 1b.
   
 0.537
LOC103471855
LIM domain binding 2a.
   
 0.537
ldb1
LIM domain binding 1a.
   
 0.537
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.