STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469156Family with sequence similarity 173 member A. (227 aa)    
Predicted Functional Partners:
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.620
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.602
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.576
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.567
bysl
Bystin-like.
   
 0.556
etfbkmt
Electron transfer flavoprotein subunit beta lysine methyltransferase.
   
 
 0.549
tsr1
TSR1 ribosome maturation factor.
   
 0.543
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.524
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.522
tmem104
Transmembrane protein 104.
      
 0.522
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.