STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474391LisH domain-containing protein. (1307 aa)    
Predicted Functional Partners:
LOC103482232
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
    
 
 0.583
iqcb1
Uncharacterized protein.
   
 
 0.579
LOC103474226
Zgc:112083.
    
 
 0.575
casp8ap2
Uncharacterized protein.
   
 
 0.569
lsm11
LSM11, U7 small nuclear RNA associated.
      
 0.547
lsm10
LSM10, U7 small nuclear RNA associated.
      
 0.542
slf1
SMC5-SMC6 complex localization factor 1.
  
 0.516
cramp1
Cramped chromatin regulator homolog 1.
    
 
 0.505
hinfp
Histone H4 transcription factor.
    
 
 0.497
rbm46
RNA binding motif protein 46.
    
 
 0.479
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.