STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474393Vacuole membrane protein 1. (404 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.947
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
     
 0.940
opa1
OPA1 mitochondrial dynamin like GTPase; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.636
sec16a
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
      
 0.560
LOC103463269
Microtubule-associated protein 1Sa.
      
 0.553
LOC103458444
Microtubule-associated protein 1Sb.
      
 0.553
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.499
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
  
 0.483
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.483
rhcg
Rh family, C glycoprotein b; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.476
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.