STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfsd8Major facilitator superfamily domain containing 8. (507 aa)    
Predicted Functional Partners:
mpl
MPL proto-oncogene, thrombopoietin receptor.
    
 0.721
cln3
Battenin.
    
 
 0.632
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.615
cln5
CLN5 intracellular trafficking protein.
      
 0.575
Cln6
CLN6 transmembrane ER protein a.
      
 0.570
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.569
abhd18
Abhydrolase domain containing 18.
      
 0.549
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.549
LOC103458857
Inhibitor of DNA binding 3.
      
 0.549
mfsd6
Major facilitator superfamily domain containing 6a.
      
 0.540
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.