LOC103465382 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103465382

Signal transducer and activator of transcription. (801 aa)

Predicted Functional Partners:

tyk2

0.842

jak1

0.818

pex26

0.691

jak3

0.690

stat1

0.679

LOC103468460

0.645

LOC103482005

0.645

LOC103469946

0.641

jak2

0.641

LOC103464091

0.632

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103464091	LOC103465382	ENSPREP00000000408	ENSPREP00000025000	CREB binding protein a.	Signal transducer and activator of transcription.	0.632
LOC103464091	LOC103468460	ENSPREP00000000408	ENSPREP00000026558	CREB binding protein a.	E1A binding protein p300 b.	0.928
LOC103464091	LOC103482005	ENSPREP00000000408	ENSPREP00000030842	CREB binding protein a.	E1A binding protein p300 a.	0.928
LOC103464091	stat1	ENSPREP00000000408	ENSPREP00000033192	CREB binding protein a.	Signal transducer and activator of transcription.	0.632
LOC103465382	LOC103464091	ENSPREP00000025000	ENSPREP00000000408	Signal transducer and activator of transcription.	CREB binding protein a.	0.632
LOC103465382	LOC103468460	ENSPREP00000025000	ENSPREP00000026558	Signal transducer and activator of transcription.	E1A binding protein p300 b.	0.645
LOC103465382	LOC103469946	ENSPREP00000025000	ENSPREP00000012332	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.641
LOC103465382	LOC103482005	ENSPREP00000025000	ENSPREP00000030842	Signal transducer and activator of transcription.	E1A binding protein p300 a.	0.645
LOC103465382	jak1	ENSPREP00000025000	ENSPREP00000030183	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.818
LOC103465382	jak2	ENSPREP00000025000	ENSPREP00000013328	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.641
LOC103465382	jak3	ENSPREP00000025000	ENSPREP00000012383	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.690
LOC103465382	pex26	ENSPREP00000025000	ENSPREP00000032460	Signal transducer and activator of transcription.	Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family.	0.691
LOC103465382	stat1	ENSPREP00000025000	ENSPREP00000033192	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.679
LOC103465382	tyk2	ENSPREP00000025000	ENSPREP00000010019	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.842
LOC103468460	LOC103464091	ENSPREP00000026558	ENSPREP00000000408	E1A binding protein p300 b.	CREB binding protein a.	0.928
LOC103468460	LOC103465382	ENSPREP00000026558	ENSPREP00000025000	E1A binding protein p300 b.	Signal transducer and activator of transcription.	0.645
LOC103468460	LOC103482005	ENSPREP00000026558	ENSPREP00000030842	E1A binding protein p300 b.	E1A binding protein p300 a.	0.902
LOC103468460	stat1	ENSPREP00000026558	ENSPREP00000033192	E1A binding protein p300 b.	Signal transducer and activator of transcription.	0.645
LOC103469946	LOC103465382	ENSPREP00000012332	ENSPREP00000025000	Tyrosine-protein kinase.	Signal transducer and activator of transcription.	0.641
LOC103469946	jak1	ENSPREP00000012332	ENSPREP00000030183	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.939