ddx52 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ddx52

DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (654 aa)

Predicted Functional Partners:

utp3

0.998

krr1

0.995

pdcd11

0.994

nol6

0.991

nop14

0.991

dcaf13

0.983

wdr46

0.982

ddx47

0.981

ddx49

0.975

utp20

0.974

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dcaf13	ddx47	ENSPREP00000023789	ENSPREP00000023070	Ddb1 and cul4 associated factor 13.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	0.956
dcaf13	ddx49	ENSPREP00000023789	ENSPREP00000016576	Ddb1 and cul4 associated factor 13.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.952
dcaf13	ddx52	ENSPREP00000023789	ENSPREP00000025008	Ddb1 and cul4 associated factor 13.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.983
dcaf13	krr1	ENSPREP00000023789	ENSPREP00000020279	Ddb1 and cul4 associated factor 13.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
dcaf13	nol6	ENSPREP00000023789	ENSPREP00000006993	Ddb1 and cul4 associated factor 13.	Nucleolar protein 6.	0.983
dcaf13	nop14	ENSPREP00000023789	ENSPREP00000025074	Ddb1 and cul4 associated factor 13.	NOP14 nucleolar protein homolog (yeast).	0.998
dcaf13	pdcd11	ENSPREP00000023789	ENSPREP00000000637	Ddb1 and cul4 associated factor 13.	Programmed cell death 11.	0.995
dcaf13	utp20	ENSPREP00000023789	ENSPREP00000019708	Ddb1 and cul4 associated factor 13.	UTP20 small subunit processome component.	0.997
dcaf13	utp3	ENSPREP00000023789	ENSPREP00000007790	Ddb1 and cul4 associated factor 13.	UTP3 small subunit processome component.	0.997
dcaf13	wdr46	ENSPREP00000023789	ENSPREP00000024683	Ddb1 and cul4 associated factor 13.	WD repeat domain 46.	0.999
ddx47	dcaf13	ENSPREP00000023070	ENSPREP00000023789	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	Ddb1 and cul4 associated factor 13.	0.956
ddx47	ddx49	ENSPREP00000023070	ENSPREP00000016576	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.962
ddx47	ddx52	ENSPREP00000023070	ENSPREP00000025008	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.	0.981
ddx47	krr1	ENSPREP00000023070	ENSPREP00000020279	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.898
ddx47	nol6	ENSPREP00000023070	ENSPREP00000006993	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	Nucleolar protein 6.	0.873
ddx47	nop14	ENSPREP00000023070	ENSPREP00000025074	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	NOP14 nucleolar protein homolog (yeast).	0.971
ddx47	pdcd11	ENSPREP00000023070	ENSPREP00000000637	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	Programmed cell death 11.	0.979
ddx47	utp20	ENSPREP00000023070	ENSPREP00000019708	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	UTP20 small subunit processome component.	0.953
ddx47	utp3	ENSPREP00000023070	ENSPREP00000007790	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	UTP3 small subunit processome component.	0.997
ddx47	wdr46	ENSPREP00000023070	ENSPREP00000024683	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.	WD repeat domain 46.	0.984