STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479861Mucolipin 3a. (547 aa)    
Predicted Functional Partners:
mcoln1
Mucolipin 1b.
  
  
 
0.906
LOC103467683
Mucolipin 1a.
  
  
 
0.906
LOC103466032
Tetraspanin.
   
  
 0.652
LOC103479822
Elastin microfibril interfacer 2a.
      
 0.646
rad18
RAD18 E3 ubiquitin protein ligase.
   
  
 0.635
ENSPREP00000000516
SOCS box domain-containing protein.
      
 0.566
trpm2
Transient receptor potential cation channel, subfamily M, member 2.
     
 0.564
ENSPREP00000022126
Ion_trans domain-containing protein.
     
 0.564
ENSPREP00000023207
LSDAT_euk domain-containing protein.
     
 0.564
ENSPREP00000026406
Oxoglutarate dehydrogenase.
      
 0.528
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.