STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103481036CDC42 effector protein (Rho GTPase binding) 1a. (363 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
    
 0.650
LOC103465423
Cell division cycle 42.
    
 0.650
LOC103472837
Uncharacterized protein.
    
 0.524
LOC103477993
Uncharacterized protein.
    
 0.524
LOC103477991
Uncharacterized protein.
    
 0.524
stxbp6
Syntaxin binding protein 6 (amisyn).
      
 0.468
rhoh
Ras homolog family member H.
    
 0.457
rhoq
Ras homolog family member Q.
    
 0.457
RHOG
Ras homolog family member G.
    
 0.430
ENSPREP00000010679
Ras homolog gene family, member Gd.
    
 0.430
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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