STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477551Platelet endothelial aggregation receptor 1. (969 aa)    
Predicted Functional Partners:
sharpin
SHANK-associated RH domain interacting protein.
     
 0.684
ENSPREP00000022662
Extended synaptotagmin-like protein 1b.
      
 0.647
LOC103467367
Extended synaptotagmin-like protein 1a.
      
 0.646
asb1
Ankyrin repeat and SOCS box containing 1.
    
 0.643
gpatch4
G patch domain containing 4.
      
 0.549
gulp1
GULP PTB domain containing engulfment adaptor 1a.
   
 
 0.544
zmiz2
Zinc finger MIZ-type containing 2.
   
 0.523
gmds
GDP-mannose 4,6-dehydratase.
      
 0.522
pclo
Piccolo presynaptic cytomatrix protein a.
     
 0.482
tspan11
Tetraspanin.
     
 0.478
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.