STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000025430BUD13 homolog. (482 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.991
snip1
Smad nuclear interacting protein.
   
 0.991
prpf19
Pre-mRNA processing factor 19.
    
 
 0.989
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.989
mfap1
Microfibril associated protein 1.
   
   0.981
ENSPREP00000004346
Uncharacterized protein.
   
 0.978
Rbmx2
Uncharacterized protein.
   
 0.978
cwc22
CWC22 spliceosome associated protein homolog.
   
 
 0.958
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.955
rnf113a
Ring finger protein 113A.
    
 
 0.955
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.