STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478733Uncharacterized protein. (483 aa)    
Predicted Functional Partners:
prph
Peripherin; Belongs to the intermediate filament family.
      
 0.550
per3
Period circadian clock 3.
   
 
 0.518
clg11h6orf62
Zgc:111986.
      
 0.471
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
      
 0.463
npas4
Neuronal PAS domain protein 4a.
      
 0.435
LOC103478472
Uncharacterized protein.
  
     0.416
bhlhe41
Basic helix-loop-helix family, member e41.
    
 
 0.416
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 
 0.411
miga2
Mitoguardin 2.
      
 0.402
LOC103479643
Period circadian clock 2.
   
 
 0.402
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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