STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
susd1Sushi domain containing 1. (850 aa)    
Predicted Functional Partners:
cacng5
Calcium channel, voltage-dependent, gamma subunit 5a.
    
 0.698
LOC103480388
Zgc:162171.
      
 0.671
ccdc115
Coiled-coil domain containing 115.
    
 
 0.624
hspa4l
Heat shock protein 4 like.
    
 
 0.566
spg11
SPG11 vesicle trafficking associated, spatacsin.
      
 0.549
tdrd3
Tudor domain containing 3.
      
 0.549
slc46a2
Solute carrier family 46 member 2.
    
 
 0.530
LOC103470636
Uncharacterized protein.
     
 0.475
SUSD2
Sushi domain containing 2.
     
 0.475
ap5m1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
      
 0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.