STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kdm2aJmjC domain-containing protein. (245 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.999
LOC103470607
Lysine (K)-specific demethylase 2Ba.
 
   
 0.902
fbxl19
Uncharacterized protein.
 
   
 0.902
ENSPREP00000025349
Uncharacterized protein.
 
   
 0.902
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.859
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.859
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.859
LOC103474461
Cullin 3; Belongs to the cullin family.
    
 0.859
rnf2
Ring finger protein 2.
   
 
 0.841
RING1
Ring finger protein 1.
   
 
 0.841
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.