STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata6GATA binding protein 6. (454 aa)    
Predicted Functional Partners:
nkx2-5
NK2 homeobox 5.
   
 0.854
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.753
lmcd1
LIM and cysteine-rich domains 1.
    
 0.719
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.704
zfpm1
Zinc finger protein, FOG family member 1.
   
 0.696
foxa2
Forkhead box A2.
   
 0.667
Sox2
SRY-box transcription factor 2.
    
 0.652
ENSPREP00000028065
Forkhead box A3.
   
 0.619
hand2
Heart and neural crest derivatives expressed 2.
   
 0.607
Tal1
BHLH domain-containing protein.
   
 0.591
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.