STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pick1Protein interacting with prkca 1. (409 aa)    
Predicted Functional Partners:
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 0.915
LOC103470494
Uncharacterized protein.
    
 0.915
LOC103464302
Glutamate receptor interacting protein 2b.
   
 0.834
grip1
Glutamate receptor interacting protein 1.
    
 0.769
LOC103467517
Glutamate receptor interacting protein 2a.
    
 0.769
tspan7
Tetraspanin 7b; Belongs to the tetraspanin (TM4SF) family.
     
 0.726
LOC103481172
Tetraspanin.
     
 0.726
nsf
N-ethylmaleimide-sensitive factor a.
   
 
 0.680
LOC103481708
N-ethylmaleimide-sensitive factor b; Belongs to the AAA ATPase family.
   
 
 0.680
tspan6
Tetraspanin.
     
 0.667
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.