STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478176Protein S100; Belongs to the S-100 family. (85 aa)    
Predicted Functional Partners:
ENSPREP00000021903
Uncharacterized protein.
    
 0.549
LOC103468547
Parvalbumin 6; Belongs to the parvalbumin family.
    
 0.545
LOC103462554
Calbindin 2b.
    
 0.541
gak
Cyclin G associated kinase.
    
 0.445
LOC103478031
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.440
cgref1
Cell growth regulator with EF-hand domain 1.
      
 0.440
sdf4
Stromal cell derived factor 4.
    
 
 0.437
LOC103478173
Protein S100; Belongs to the S-100 family.
  
   
 0.423
ubxn7
UBX domain protein 7.
    
 0.415
ift81
Intraflagellar transport 81 homolog.
    
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.