LOC103477571 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103477571

Nuclear receptor subfamily 2, group F, member 5. (404 aa)

Predicted Functional Partners:

ncor1

0.609

ncor2

0.544

TADA1

0.515

LOC103478736

0.515

LOC103465931

0.491

LOC103478252

0.480

polr2b

0.417

ENSPREP00000028517

0.404

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000028517	LOC103465931	ENSPREP00000028517	ENSPREP00000018180	ANK_REP_REGION domain-containing protein.	Cyclin-dependent kinase inhibitor 1Cb.	0.429
ENSPREP00000028517	LOC103477571	ENSPREP00000028517	ENSPREP00000025878	ANK_REP_REGION domain-containing protein.	Nuclear receptor subfamily 2, group F, member 5.	0.404
ENSPREP00000028517	polr2b	ENSPREP00000028517	ENSPREP00000016486	ANK_REP_REGION domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.535
LOC103465931	ENSPREP00000028517	ENSPREP00000018180	ENSPREP00000028517	Cyclin-dependent kinase inhibitor 1Cb.	ANK_REP_REGION domain-containing protein.	0.429
LOC103465931	LOC103477571	ENSPREP00000018180	ENSPREP00000025878	Cyclin-dependent kinase inhibitor 1Cb.	Nuclear receptor subfamily 2, group F, member 5.	0.491
LOC103477571	ENSPREP00000028517	ENSPREP00000025878	ENSPREP00000028517	Nuclear receptor subfamily 2, group F, member 5.	ANK_REP_REGION domain-containing protein.	0.404
LOC103477571	LOC103465931	ENSPREP00000025878	ENSPREP00000018180	Nuclear receptor subfamily 2, group F, member 5.	Cyclin-dependent kinase inhibitor 1Cb.	0.491
LOC103477571	LOC103478252	ENSPREP00000025878	ENSPREP00000022455	Nuclear receptor subfamily 2, group F, member 5.	Growth differentiation factor 6a.	0.480
LOC103477571	LOC103478736	ENSPREP00000025878	ENSPREP00000025377	Nuclear receptor subfamily 2, group F, member 5.	Cellular retinoic acid binding protein 2, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	0.515
LOC103477571	TADA1	ENSPREP00000025878	ENSPREP00000005904	Nuclear receptor subfamily 2, group F, member 5.	Transcriptional adaptor 1.	0.515
LOC103477571	ncor1	ENSPREP00000025878	ENSPREP00000009626	Nuclear receptor subfamily 2, group F, member 5.	Nuclear receptor corepressor 1.	0.609
LOC103477571	ncor2	ENSPREP00000025878	ENSPREP00000001887	Nuclear receptor subfamily 2, group F, member 5.	Nuclear receptor corepressor 2.	0.544
LOC103477571	polr2b	ENSPREP00000025878	ENSPREP00000016486	Nuclear receptor subfamily 2, group F, member 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.417
LOC103478252	LOC103477571	ENSPREP00000022455	ENSPREP00000025878	Growth differentiation factor 6a.	Nuclear receptor subfamily 2, group F, member 5.	0.480
LOC103478736	LOC103477571	ENSPREP00000025377	ENSPREP00000025878	Cellular retinoic acid binding protein 2, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.	Nuclear receptor subfamily 2, group F, member 5.	0.515
TADA1	LOC103477571	ENSPREP00000005904	ENSPREP00000025878	Transcriptional adaptor 1.	Nuclear receptor subfamily 2, group F, member 5.	0.515
ncor1	LOC103477571	ENSPREP00000009626	ENSPREP00000025878	Nuclear receptor corepressor 1.	Nuclear receptor subfamily 2, group F, member 5.	0.609
ncor2	LOC103477571	ENSPREP00000001887	ENSPREP00000025878	Nuclear receptor corepressor 2.	Nuclear receptor subfamily 2, group F, member 5.	0.544
polr2b	ENSPREP00000028517	ENSPREP00000016486	ENSPREP00000028517	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ANK_REP_REGION domain-containing protein.	0.535
polr2b	LOC103477571	ENSPREP00000016486	ENSPREP00000025878	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nuclear receptor subfamily 2, group F, member 5.	0.417