STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddrgk1Uncharacterized protein. (143 aa)    
Predicted Functional Partners:
ufl1
UFM1-specific ligase 1.
    
 
 0.953
cdk5rap3
CDK5 regulatory subunit associated protein 3.
    
 
 0.953
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
    
 
 0.788
ufm1
Ubiquitin-fold modifier 1.
    
 
 0.728
thnsl2
Threonine synthase-like 2.
      
 0.681
znf366
Zinc finger protein 366.
      
 0.681
znf367
Zinc finger protein 367.
      
 0.681
ubox5
U-box domain containing 5.
      
 0.645
ptpra
Receptor-type tyrosine-protein phosphatase.
      
 0.645
ufsp2
Ufm1-specific peptidase 2.
    
 
 0.638
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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